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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
21
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
21
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
narrow histone mark
5
control
Date released
33
June, 2019
19
August, 2017
10
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
45
bam
44
bed narrowPeak
40
bed broadPeak
36
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
77
Homo sapiens
Biosample type
72
tissue
5
primary cell
Organ
798
pancreas
729
liver
636
connective tissue
478
adipose tissue
394
epithelium
349
heart
318
kidney
209
vasculature
205
blood vessel
168
brain
135
artery
106
limb
77
musculature of body
bone element
68
blood
68
bodily fluid
58
eye
35
nerve
25
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
77
AMP
Genome assembly (visualization)
57
hg19
43
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
inconsistent replicate
organ_slims!
bone element
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
1
muscle of leg
12
5
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
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