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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
Assay category
53
DNA binding
Target of assay
109
histone
109
histone modification
broad histone mark
52
narrow histone mark
41
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
17
August, 2017
11
May, 2021
10
December, 2017
8
February, 2018
7
August, 2021
Available data
39
bam
39
bed narrowPeak
39
bigWig
31
fastq
12
tagAlign
5
bigBed narrowPeak
4
bed bed3+
Organism
53
Homo sapiens
Biosample type
318
tissue
83
primary cell
53
in vitro differentiated cells
12
cell line
1
stem cell
Organ
17
connective tissue
6
epithelium
5
embryo
5
liver
1
pancreas
Project
53
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
Lab
43
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
in vitro differentiated cells
adipocyte
17
embryonic stem cell
11
neural progenitor cell
7
hepatocyte
5
pancreatic endoderm
5
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