Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
188
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
66
histone modification
65
histone
61
control
61
transcription factor
41
broad histone mark
24
narrow histone mark
14
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
153
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
13
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
September, 2017
2
July, 2018
1
March, 2019
Available data
1872
bam
1744
bigWig
1073
tsv
976
bed narrowPeak
557
bigBed narrowPeak
345
fastq
234
tagAlign
210
bed broadPeak
188
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
338
Homo sapiens
Biosample type
414
cell line
353
primary cell
345
tissue
131
in vitro differentiated cells
4
stem cell
Organ
197
pancreas
83
liver
31
adipose tissue
31
connective tissue
24
spleen
8
brain
2
musculature of body
Project
345
AMP
Genome assembly (visualization)
267
hg19
253
GRCh38
Lab
319
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
September, 2017
BIOSAMPLE
ASSAY
345 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
12
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 7 more…
See all biosamples
Download