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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
28
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
28
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
25
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2018
3
February, 2020
3
March, 2020
2
December, 2017
2
July, 2019
Available data
213
bam
bigWig
144
bed narrowPeak
82
bigBed narrowPeak
80
tsv
28
fastq
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
86
Homo sapiens
Biosample type
63
tissue
10
cell line
8
primary cell
5
in vitro differentiated cells
Organ
295
pancreas
215
kidney
189
epithelium
167
heart
167
liver
105
connective tissue
81
vasculature
80
blood vessel
65
adipose tissue
62
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
vein
5
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
86
AMP
Genome assembly (visualization)
44
GRCh38
13
hg19
Lab
86
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
86 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
in vitro differentiated cells
pancreatic endoderm
5
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