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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
12
total RNA-seq
1
GRO-seq
Assay category
17
DNA binding
12
Transcription
Target of assay
9
histone
9
histone modification
5
control
5
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
8
August, 2021
8
December, 2017
1
January, 2018
Available data
29
bam
25
bigWig
22
fastq
12
bed narrowPeak
12
tsv
3
bed bed3+
Organism
30
Homo sapiens
Biosample type
22
in vitro differentiated cells
8
cell line
Organ
793
pancreas
771
liver
644
connective tissue
477
adipose tissue
379
heart
378
epithelium
314
kidney
195
brain
188
vasculature
183
blood vessel
115
artery
87
musculature of body
75
bone element
69
blood
69
bodily fluid
52
limb
40
eye
30
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
vein
Project
30
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
30
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
17
4
1
cell line
H1-hESC
8
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