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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
ChIP-seq
Assay category
372
DNA binding
Target of assay
763
histone modification
762
histone
493
transcription factor
389
narrow histone mark
372
broad histone mark
298
control
103
RNA binding protein
82
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
92
August, 2017
56
May, 2019
50
November, 2017
43
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
4
January, 2019
Available data
302
bigWig
301
bed narrowPeak
271
bam
220
bigBed narrowPeak
95
tagAlign
84
fastq
27
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
369
Homo sapiens
Biosample type
302
tissue
primary cell
56
in vitro differentiated cells
13
cell line
1
stem cell
Organ
70
brain
57
heart
44
pancreas
41
liver
40
connective tissue
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
10
kidney
7
epithelium
4
embryo
4
spleen
Project
372
AMP
Genome assembly (visualization)
289
GRCh38
246
hg19
Lab
341
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
372 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
Panc1
4
stem cell
hESC
1
See all biosamples
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