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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
47
total RNA-seq
27
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
180
DNA binding
47
Transcription
28
DNA accessibility
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
RNA binding protein
3
chromatin remodeller
Date released
64
August, 2017
59
May, 2021
42
August, 2021
39
February, 2018
37
December, 2017
8
February, 2021
6
February, 2023
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
184
bam
160
bigWig
131
fastq
113
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
15
bigBed narrowPeak
6
bed bedgraph
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
263
Homo sapiens
Biosample type
2652
tissue
1024
primary cell
504
cell line
263
in vitro differentiated cells
9
stem cell
Organ
84
connective tissue
23
embryo
17
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
263
AMP
Genome assembly (visualization)
178
hg19
160
GRCh38
4
hg18
Lab
215
AMP-T2D consortium
42
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
files.file_type!
bed bed3
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
63
5
8
1
1
embryonic stem cell
35
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
hepatocyte
13
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