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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
Assay category
42
DNA binding
Target of assay
25
transcription factor
17
histone
17
histone modification
13
chromatin remodeller
11
broad histone mark
6
RNA binding protein
6
narrow histone mark
1
recombinant protein
Date released
21
November, 2017
8
December, 2017
6
August, 2017
5
November, 2018
2
February, 2018
Available data
42
bam
42
bigWig
42
fastq
40
bed narrowPeak
24
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
8
bed bed3+
Organism
42
Homo sapiens
Biosample type
26
cell line
16
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
26
liver
6
connective tissue
2
embryo
Project
42
AMP
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
42
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
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