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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
86
ChIP-seq
28
snATAC-seq
16
pCHi-C
11
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
112
Transcription
86
DNA binding
39
DNA accessibility
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
41
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
5
March, 2023
4
March, 2020
Available data
178
bam
178
bigWig
92
tsv
86
bed narrowPeak
84
tagAlign
1
hic
Organism
254
Homo sapiens
Biosample type
200
primary cell
50
tissue
7
cell line
2
stem cell
Organ
kidney
30
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
HPAP
235
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
179
GRCh38
178
hg19
Lab
231
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
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audit.ERROR.category!
inconsistent ontology term
award.project!
AMP
HPAP
organ_slims!
kidney
ureter
BIOSAMPLE
ASSAY
259 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
7
2
6
11
lung
10
9
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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