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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
20
ChIP-seq
14
total RNA-seq
11
snATAC-seq
5
Hi-C
4
MeRIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
31
DNA accessibility
20
DNA binding
14
Transcription
5
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
broad histone mark
8
control
6
narrow histone mark
2
nucleotide modification
Date released
20
August, 2017
19
February, 2023
8
January, 2021
6
March, 2020
4
July, 2018
4
March, 2019
4
November, 2020
4
October, 2019
2
August, 2021
July, 2019
1
August, 2022
1
February, 2020
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
556
bigWig
397
fastq
368
tsv
200
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
75
Homo sapiens
Biosample type
74
tissue
2
cell line
Organ
204
kidney
178
heart
107
liver
84
connective tissue
76
pancreas
53
eye
49
adipose tissue
48
blood vessel
48
vasculature
39
artery
37
brain
34
musculature of body
20
epithelium
20
lung
9
blood
9
bodily fluid
9
bone element
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
HPAP
48
AMP
28
T1D
Genome assembly (visualization)
15
hg19
4
GRCh38
Lab
38
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
award.project!
HPAP
files.file_type!
bam
month_released!
July, 2019
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
20
20
12
7
3
4
pancreas
1
4
1
1
body of pancreas
1
cell line
EndoC_BH1
1
Panc1
1
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