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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
total RNA-seq
125
ChIP-seq
22
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
507
Transcription
125
DNA binding
22
DNA accessibility
Target of assay
91
histone
91
histone modification
58
broad histone mark
33
narrow histone mark
25
control
9
transcription factor
4
RNA binding protein
Date released
542
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
192
June, 2019
162
July, 2018
118
February, 2023
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
2
June, 2018
1
August, 2022
1
October, 2022
Available data
645
bam
602
bigWig
509
tsv
118
bed narrowPeak
95
bigBed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
659
Homo sapiens
Biosample type
576
tissue
70
cell line
8
in vitro differentiated cells
5
primary cell
Organ
455
connective tissue
386
adipose tissue
116
blood vessel
116
vasculature
87
heart
71
artery
66
bone element
28
brain
13
limb
10
kidney
8
skeleton
7
musculature of body
3
liver
2
epithelium
2
pancreas
Project
659
AMP
HPAP
Genome assembly (visualization)
625
hg19
618
GRCh38
Lab
659
AMP-T2D consortium
Audit category:
inconsistent ontology term
5
audit script error
1
inconsistent replicate
audit.ERROR.category!
inconsistent ontology term
award.project!
HPAP
month_released!
October, 2017
BIOSAMPLE
ASSAY
659 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 23 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
4
primary cell
osteoblast
1
1
1
kidney epithelial cell
2
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