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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
441
bam
425
bigWig
401
tsv
44
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
489
Homo sapiens
Biosample type
487
tissue
2
primary cell
1
in vitro differentiated cells
Organ
790
liver
713
pancreas
665
connective tissue
490
adipose tissue
387
heart
331
kidney
283
brain
281
epithelium
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
490
AMP
Genome assembly (visualization)
425
hg19
423
GRCh38
Lab
490
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
award.project!
HPAP
organ_slims!
mammary gland
vein
BIOSAMPLE
ASSAY
490 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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