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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ATAC-seq
180
single cell RNA-seq
170
ChIP-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
28
DNase-seq
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
333
Transcription
265
DNA accessibility
170
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
136
histone
136
histone modification
70
broad histone mark
66
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
98
May, 2020
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
May, 2021
48
February, 2021
43
April, 2018
42
July, 2018
32
October, 2019
30
June, 2019
29
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
402
fastq
399
bigWig
388
bam
186
bed narrowPeak
161
tsv
153
zippedFastqFolder
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
835
Homo sapiens
Biosample type
2614
tissue
835
primary cell
565
cell line
279
in vitro differentiated cells
9
stem cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
25
connective tissue
22
vein
21
brain
13
liver
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
510
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
410
hg19
324
GRCh38
Lab
475
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
award.project!
T1D
month_released!
November, 2019
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
835 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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