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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
903
total RNA-seq
718
ChIP-seq
248
ATAC-seq
177
DNase-seq
124
single cell RNA-seq
27
WGBS
22
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
MeRIP-seq
Assay category
1043
Transcription
718
DNA binding
437
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
624
histone modification
623
histone
320
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
255
August, 2017
229
August, 2021
213
October, 2019
170
May, 2020
162
June, 2019
July, 2018
93
May, 2019
77
February, 2023
77
July, 2019
70
November, 2017
66
April, 2019
66
May, 2022
45
October, 2018
40
May, 2024
39
May, 2021
39
November, 2019
36
December, 2017
34
March, 2020
24
February, 2020
23
November, 2018
20
October, 2017
15
May, 2023
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1651
bigWig
1618
bam
978
bed narrowPeak
957
tsv
560
bigBed narrowPeak
308
fastq
212
bed broadPeak
201
bed bed3+
186
tagAlign
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2275
Homo sapiens
Biosample type
2282
tissue
488
cell line
438
primary cell
244
in vitro differentiated cells
6
stem cell
Organ
522
connective tissue
463
adipose tissue
326
pancreas
315
liver
297
heart
246
kidney
237
brain
117
blood vessel
117
vasculature
104
limb
77
musculature of body
74
bone element
66
artery
56
eye
32
nerve
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
2282
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1734
GRCh38
1630
hg19
Lab
2025
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
month_released!
July, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
2282 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
snATAC-seq
FAIRE-seq
RNA microarray
snDrop-seq
MeRIP-seq
tissue
adipose tissue
382
1
3
3
1
liver
167
102
20
2
1
3
1
1
1
1
islet of Langerhans
165
56
57
1
6
4
3
1
1
1
2
kidney
49
21
75
13
17
1
1
6
1
heart left ventricle
3
29
2
3
18
4
1
1
1
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