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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
30
DNase-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
97
DNA binding
35
DNA accessibility
23
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
183
histone
183
histone modification
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
56
November, 2017
28
June, 2019
18
May, 2019
16
July, 2019
14
October, 2017
12
October, 2019
11
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
132
bam
109
bigWig
93
bed narrowPeak
90
bigBed narrowPeak
64
tagAlign
35
bed broadPeak
32
bed bed3+
31
bigBed broadPeak
25
tsv
13
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
160
Homo sapiens
Biosample type
150
tissue
10
primary cell
Organ
730
liver
635
connective tissue
618
pancreas
478
adipose tissue
349
heart
271
kidney
242
epithelium
vasculature
205
blood vessel
168
brain
135
artery
106
limb
77
musculature of body
74
bone element
60
blood
60
bodily fluid
58
eye
35
nerve
25
embryo
23
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
160
AMP
Genome assembly (visualization)
106
GRCh38
64
hg19
Lab
160
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
organ_slims!
vasculature
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
+ See 29 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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