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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
84
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
92
Transcription
84
DNA binding
8
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
41
May, 2020
8
January, 2021
5
February, 2023
Available data
176
bam
176
bigWig
92
tsv
84
bed narrowPeak
84
tagAlign
Organism
205
Homo sapiens
Biosample type
199
primary cell
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3265
AMP
205
T1D
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
176
GRCh38
176
hg19
Lab
205
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
award.project!
HPAP
organ_slims!
pancreas
BIOSAMPLE
ASSAY
205 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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