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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
RRBS
16
WGBS
Assay category
33
DNA methylation
Date released
21
July, 2019
6
August, 2017
6
November, 2018
Available data
2660
bam
2513
bigWig
1371
bed narrowPeak
1370
tsv
920
fastq
663
bigBed narrowPeak
375
tagAlign
264
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
153
zippedFastqFolder
75
txt
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
15
bedpe bed3+
11
bed bed3
8
csv
6
bed bedgraph
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
33
Homo sapiens
Biosample type
25
tissue
8
primary cell
cell line
Organ
7
heart
6
pancreas
5
epithelium
4
musculature of body
3
kidney
2
adipose tissue
2
brain
2
connective tissue
2
liver
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
33
AMP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
33 results
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RRBS
WGBS
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 3 more…
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