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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
36
ChIP-seq
6
snATAC-seq
3
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
161
DNA accessibility
121
Transcription
36
DNA binding
3
DNA methylation
1
3D chromatin structure
Target of assay
28
histone
28
histone modification
15
broad histone mark
13
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
77
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
10
July, 2019
8
February, 2021
3
December, 2019
2
May, 2019
Available data
170
bed narrowPeak
122
bam
114
bigWig
98
bigBed narrowPeak
77
bed bed3+
77
bed broadPeak
77
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
327
Homo sapiens
Biosample type
299
tissue
28
primary cell
cell line
Organ
844
pancreas
665
connective tissue
490
adipose tissue
430
epithelium
389
liver
327
kidney
321
heart
283
brain
169
vasculature
164
blood vessel
121
limb
87
musculature of body
75
artery
75
bone element
61
eye
43
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
Project
280
AMP
47
KPMP
Genome assembly (visualization)
188
GRCh38
111
hg19
Lab
142
Katalin Susztak, Upenn
138
AMP-T2D consortium
47
KPMP
Audit category:
inconsistent ontology term
7
audit script error
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
month_released!
March, 2019
organ_slims!
ovary
BIOSAMPLE
ASSAY
327 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
7
kidney epithelial cell
1
1
2
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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