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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
95
total RNA-seq
83
ATAC-seq
69
single cell RNA-seq
47
WGBS
17
DNase-seq
7
Hi-C
5
RRBS
1
FAIRE-seq
1
RNA microarray
Assay category
164
Transcription
101
DNA accessibility
101
DNA binding
52
DNA methylation
7
3D chromatin structure
Target of assay
76
histone
76
histone modification
38
broad histone mark
38
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
80
May, 2022
61
September, 2018
51
February, 2023
33
April, 2018
32
July, 2018
32
October, 2019
29
August, 2017
19
September, 2020
16
June, 2019
15
December, 2017
12
July, 2019
7
August, 2020
6
December, 2019
6
February, 2021
6
November, 2017
5
September, 2017
4
August, 2021
May, 2021
3
August, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
June, 2018
1
March, 2020
Available data
252
fastq
248
bam
239
bigWig
126
bed narrowPeak
118
tsv
80
zippedFastqFolder
70
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
426
Homo sapiens
Biosample type
396
primary cell
15
in vitro differentiated cells
15
tissue
cell line
Organ
809
pancreas
663
connective tissue
490
adipose tissue
426
epithelium
389
liver
327
kidney
318
heart
283
brain
169
vasculature
164
blood vessel
121
limb
87
musculature of body
75
artery
74
bone element
61
eye
43
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
274
AMP
152
HPAP
Genome assembly (visualization)
245
hg19
232
GRCh38
Lab
274
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
5
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
month_released!
May, 2021
organ_slims!
esophagus
BIOSAMPLE
ASSAY
426 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
pancreatic acinar cell
8
4
9
11
1
pancreatic ductal cell
13
4
4
10
endothelial cell of umbilical vein
17
2
2
1
+ See 18 more…
in vitro differentiated cells
hepatocyte
15
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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