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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
pCHi-C
9
total RNA-seq
8
Hi-C
2
ATAC-seq
2
ChIP-seq
Assay category
9
Transcription
8
3D chromatin structure
2
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
February, 2021
411
August, 2017
332
May, 2020
308
May, 2021
275
August, 2021
274
October, 2019
200
May, 2022
192
June, 2019
188
February, 2023
162
July, 2018
117
May, 2019
106
July, 2019
91
November, 2017
90
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
42
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
27
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
March, 2023
3
October, 2022
2
June, 2018
1
August, 2022
Available data
29
tsv
11
bigWig
9
bam
8
bedpe bed3+
8
hic
2
bed narrowPeak
Organism
42
Homo sapiens
Biosample type
37
tissue
cell line
3
stem cell
1
in vitro differentiated cells
1
primary cell
Organ
9
pancreas
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
connective tissue
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
thymus
1
vein
Project
38
AMP
4
T1D
Genome assembly (visualization)
19
hg19
9
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
month_released!
February, 2021
organ_slims!
thymus
BIOSAMPLE
ASSAY
42 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 13 more…
stem cell
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
in vitro differentiated cells
embryonic stem cell
1
primary cell
endothelial cell of umbilical vein
1
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