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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
4
February, 2023
1
October, 2022
Available data
2990
bam
2811
bigWig
1635
bed narrowPeak
1408
tsv
1210
fastq
1001
bigBed narrowPeak
358
tagAlign
317
bed broadPeak
280
bigBed broadPeak
244
bed bed3+
153
zippedFastqFolder
74
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
15
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
73
Homo sapiens
Biosample type
73
tissue
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
74
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
6
audit script error
audit.ERROR.category!
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
esophagus
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
cell line
MIN6
1
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