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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
ChIP-seq
108
total RNA-seq
12
ATAC-seq
5
GRO-seq
3
DNase-seq
1
Hi-C
1
WGBS
Assay category
503
DNA binding
108
Transcription
15
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
382
transcription factor
103
histone
103
histone modification
81
recombinant protein
68
RNA binding protein
52
narrow histone mark
50
broad histone mark
33
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
61
February, 2021
57
November, 2018
48
August, 2017
44
August, 2021
34
December, 2017
31
February, 2018
27
December, 2018
21
May, 2021
20
January, 2019
12
October, 2019
6
January, 2018
2
February, 2023
2
March, 2020
Available data
713
bam
633
bigWig
568
fastq
504
bed narrowPeak
372
bigBed narrowPeak
124
tsv
60
bed broadPeak
60
bigBed broadPeak
57
tagAlign
29
bed bed3+
6
bed bed3
6
bed bedgraph
3
tar
3
txt
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
hic
1
vcf
Organism
633
Homo sapiens
Biosample type
tissue
primary cell
464
cell line
166
in vitro differentiated cells
3
stem cell
Organ
346
liver
57
connective tissue
57
heart
56
artery
56
blood vessel
56
vasculature
55
blood
55
bodily fluid
25
embryo
19
epithelium
10
pancreas
2
kidney
Project
633
AMP
Genome assembly (visualization)
622
hg19
551
GRCh38
5
hg18
Lab
610
AMP-T2D consortium
14
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
1
inconsistent control
Audit category:
17
missing controlled_by
Audit category:
44
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
tissue
BIOSAMPLE
ASSAY
633 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
H1-hESC
8
Panc1
6
1
1
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in vitro differentiated cells
adipocyte
47
4
3
1
neural progenitor cell
13
7
pancreatic endoderm
12
4
1
hepatocyte
14
embryonic stem cell
2
2
6
+ See 15 more…
stem cell
hESC
2
1
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