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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
33
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
31
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
56
bigWig
50
bed narrowPeak
44
bed broadPeak
43
bam
37
bigBed narrowPeak
32
bed bed3+
31
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
81
Homo sapiens
Biosample type
81
tissue
primary cell
Organ
776
liver
639
connective tissue
524
pancreas
488
adipose tissue
380
heart
298
kidney
262
brain
199
blood vessel
199
vasculature
139
artery
121
limb
81
musculature of body
74
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
37
epithelium
31
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
81
AMP
Genome assembly (visualization)
60
hg19
41
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
1
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
csv
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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