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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
31
ChIP-seq
2
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
179
DNA accessibility
31
DNA binding
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
162
June, 2019
15
December, 2017
14
August, 2017
9
November, 2018
6
October, 2019
2
August, 2021
2
February, 2023
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2086
bam
1869
bigWig
1139
tsv
1028
bed narrowPeak
537
bigBed narrowPeak
496
fastq
289
tagAlign
228
bed broadPeak
214
bed bed3+
191
bigBed broadPeak
72
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
12
bedpe bed3+
12
hic
7
bed bed3
6
bed bedgraph
6
csv
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
214
Homo sapiens
Biosample type
191
tissue
primary cell
17
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
35
limb
32
musculature of body
27
brain
27
heart
22
pancreas
18
ureter
7
connective tissue
5
blood vessel
5
liver
5
vasculature
4
artery
3
embryo
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
214
AMP
Genome assembly (visualization)
208
GRCh38
198
hg19
Lab
212
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
organ_slims!
bone element
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
214 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
islet of Langerhans
14
kidney
13
+ See 41 more…
in vitro differentiated cells
Posterior foregut
3
adipocyte
1
1
1
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 2 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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