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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
93
ChIP-seq
2
ATAC-seq
Assay category
179
DNA accessibility
93
DNA binding
Target of assay
49
histone
49
histone modification
44
transcription factor
28
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
64
November, 2017
27
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
Available data
2510
bam
2316
bigWig
1385
bed narrowPeak
1197
tsv
851
bigBed narrowPeak
839
fastq
295
tagAlign
272
bed broadPeak
235
bigBed broadPeak
233
bed bed3+
70
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
12
bedpe bed3+
12
hic
11
bed bed3
6
bed bedgraph
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
266
Homo sapiens
Biosample type
212
tissue
59
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
61
liver
44
musculature of body
36
brain
35
limb
27
heart
21
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
4
connective tissue
3
adipose tissue
3
eye
2
nerve
1
spleen
Project
272
AMP
Genome assembly (visualization)
255
hg19
236
GRCh38
Lab
270
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
272 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
skeletal muscle tissue
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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