Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
Hi-C
Assay category
12
3D chromatin structure
Date released
7
March, 2020
2
August, 2021
1
March, 2019
1
November, 2019
1
October, 2019
Available data
2524
bam
2307
bigWig
1390
bed narrowPeak
1197
tsv
861
fastq
849
bigBed narrowPeak
295
tagAlign
268
bed broadPeak
231
bed bed3+
231
bigBed broadPeak
76
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
12
bedpe bed3+
12
hic
11
bed bed3
6
bed bedgraph
6
csv
2
tar
1
bedpe
1
hdf5
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
11
tissue
primary cell
1
cell line
Organ
3
heart
3
pancreas
2
liver
2
musculature of body
1
blood vessel
1
kidney
1
vasculature
Project
12
AMP
Genome assembly (visualization)
12
hg19
Lab
9
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
tagAlign bed3+
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
12 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
cell line
HepG2
1
See all biosamples
Download