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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
16
ATAC-seq
14
total RNA-seq
6
WGBS
3
DNase-seq
2
Capture-C
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
141
DNA binding
19
DNA accessibility
16
Transcription
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
February, 2021
125
August, 2017
23
October, 2018
10
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
October, 2017
Available data
108
bam
98
fastq
90
bigWig
57
bed narrowPeak
22
tagAlign
17
bed bed3+
14
tsv
13
bigBed narrowPeak
5
bed bed3
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
186
Homo sapiens
Biosample type
102
tissue
85
in vitro differentiated cells
primary cell
Organ
774
liver
524
pancreas
314
heart
295
kidney
262
brain
187
connective tissue
133
blood vessel
133
vasculature
115
limb
102
adipose tissue
81
musculature of body
73
artery
61
blood
61
bodily fluid
56
eye
43
nerve
37
epithelium
31
embryo
25
spleen
20
lung
18
ureter
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
187
AMP
Genome assembly (visualization)
100
hg19
85
GRCh38
Lab
183
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
month_released!
February, 2021
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
Capture-C
pCHi-C
small RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
5
2
1
subcutaneous adipose tissue
12
1
5
1
1
white adipose tissue
12
adipose tissue
2
3
1
3
1
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in vitro differentiated cells
adipocyte
67
4
1
1
1
chondrocyte
5
osteoblast
1
1
preadipocyte
1
1
cardiac fibroblast
1
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