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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
DNase-seq
9
ChIP-seq
7
total RNA-seq
2
RRBS
2
STARR-seq
Assay category
12
DNA accessibility
9
DNA binding
7
Transcription
2
DNA methylation
Target of assay
8
histone
8
histone modification
5
broad histone mark
3
narrow histone mark
1
control
Date released
13
October, 2019
9
June, 2019
6
July, 2019
2
August, 2021
2
May, 2019
Available data
26
bam
25
bigWig
18
bed narrowPeak
12
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
299
tissue
28
primary cell
4
cell line
Organ
414
liver
398
epithelium
356
pancreas
102
vasculature
97
blood vessel
73
heart
69
blood
69
bodily fluid
68
artery
32
kidney
26
connective tissue
22
vein
21
brain
8
embryo
6
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
32
AMP
Genome assembly (visualization)
25
GRCh38
21
hg19
Lab
30
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
June, 2018
BIOSAMPLE
ASSAY
32 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
STARR-seq
primary cell
epithelial cell of proximal tubule
7
1
kidney epithelial cell
1
2
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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cell line
HEK293T
2
glomerular visceral epithelial cell
1
1
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