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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
32
ATAC-seq
32
total RNA-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
Assay category
167
DNA binding
32
DNA accessibility
32
Transcription
Target of assay
94
histone
94
histone modification
48
broad histone mark
46
transcription factor
45
narrow histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
64
May, 2021
42
August, 2021
39
December, 2017
February, 2018
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
151
bam
135
bigWig
103
bed narrowPeak
98
fastq
37
tagAlign
26
tsv
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
bigBed broadPeak
Organism
239
Homo sapiens
Biosample type
2511
tissue
835
primary cell
511
cell line
239
in vitro differentiated cells
9
stem cell
Organ
92
connective tissue
19
epithelium
15
liver
10
embryo
3
pancreas
1
adipose tissue
1
heart
Project
239
AMP
Genome assembly (visualization)
157
hg19
134
GRCh38
4
hg18
Lab
186
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed broadPeak
zippedFastqFolder
month_released!
February, 2018
BIOSAMPLE
ASSAY
239 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
67
8
5
1
embryonic stem cell
37
6
5
1
neural progenitor cell
21
10
7
hepatocyte
15
pancreatic endoderm
9
1
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