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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
46
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
173
DNA binding
46
Transcription
33
DNA accessibility
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
43
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
60
May, 2021
42
August, 2021
39
February, 2018
24
December, 2017
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
171
bam
149
bigWig
122
fastq
103
bed narrowPeak
40
tsv
34
tagAlign
23
bed bed3+
6
bed bedgraph
5
bed bed3
3
bigBed narrowPeak
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
260
Homo sapiens
Biosample type
2592
tissue
621
primary cell
567
cell line
260
in vitro differentiated cells
9
stem cell
Organ
93
connective tissue
23
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
260
AMP
Genome assembly (visualization)
172
hg19
149
GRCh38
4
hg18
Lab
207
AMP-T2D consortium
47
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
December, 2019
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
definitive endodermal cell
8
2
1
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