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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
148
ChIP-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
273
DNA accessibility
148
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
153
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
43
April, 2018
42
July, 2018
37
August, 2017
29
July, 2019
27
June, 2019
23
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
August, 2021
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
472
bigWig
470
bam
362
fastq
253
tsv
175
bed narrowPeak
153
zippedFastqFolder
69
bigBed narrowPeak
53
tagAlign
38
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
928
Homo sapiens
Biosample type
2364
tissue
928
primary cell
cell line
226
in vitro differentiated cells
8
stem cell
Organ
363
epithelium
310
pancreas
28
vasculature
26
connective tissue
25
kidney
24
blood vessel
18
brain
16
vein
11
liver
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
444
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
483
hg19
407
GRCh38
Lab
419
AMP-T2D consortium
324
Klaus Kaestner, Upenn
184
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
928 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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