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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ATAC-seq
87
single cell RNA-seq
48
snATAC-seq
47
WGBS
37
ChIP-seq
21
total RNA-seq
15
pCHi-C
10
Hi-C
8
RRBS
2
DNase-seq
1
DNAme array
Assay category
154
DNA accessibility
108
Transcription
56
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
February, 2023
59
September, 2020
57
May, 2020
56
May, 2021
45
February, 2021
11
July, 2019
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
575
bigWig
bam
326
fastq
270
bed narrowPeak
247
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
380
Homo sapiens
Biosample type
688
tissue
380
primary cell
78
in vitro differentiated cells
43
cell line
6
stem cell
Organ
126
epithelium
115
pancreas
blood
8
bodily fluid
5
vasculature
4
blood vessel
4
brain
4
kidney
2
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
musculature of body
Project
248
HPAP
116
AMP
15
T1D
1
ITG
Genome assembly (visualization)
52
hg19
11
GRCh38
Lab
248
Klaus Kaestner, Upenn
81
AMP-T2D consortium
50
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bam
month_released!
February, 2023
organ_slims!
blood
BIOSAMPLE
ASSAY
380 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
15
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
16
16
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
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