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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
ChIP-seq
241
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
15
pCHi-C
8
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
423
Transcription
251
DNA binding
249
DNA accessibility
56
DNA methylation
6
3D chromatin structure
Target of assay
217
histone
217
histone modification
113
broad histone mark
104
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
47
February, 2021
43
April, 2018
42
July, 2018
30
October, 2019
25
July, 2019
9
June, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
575
bigWig
564
bam
402
fastq
270
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1000
Homo sapiens
Biosample type
2441
tissue
1000
primary cell
567
cell line
256
in vitro differentiated cells
6
stem cell
Organ
376
epithelium
341
pancreas
29
vasculature
25
blood vessel
20
vein
19
connective tissue
19
kidney
13
brain
8
blood
8
bodily fluid
7
liver
5
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
476
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
559
hg19
473
GRCh38
Lab
443
AMP-T2D consortium
324
Klaus Kaestner, Upenn
232
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
nerve
BIOSAMPLE
ASSAY
1000 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
exocrine cell
39
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