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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
ChIP-seq
195
total RNA-seq
180
single cell RNA-seq
92
ATAC-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
Hi-C
8
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
377
Transcription
233
DNA binding
152
DNA accessibility
56
DNA methylation
10
3D chromatin structure
Target of assay
204
histone
204
histone modification
106
broad histone mark
98
narrow histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
205
May, 2021
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
45
August, 2017
43
April, 2018
42
July, 2018
29
July, 2019
28
October, 2019
9
June, 2019
8
January, 2021
7
August, 2020
December, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
November, 2017
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
488
bigWig
477
bam
402
fastq
270
bed narrowPeak
207
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
844
Homo sapiens
Biosample type
2315
tissue
844
primary cell
510
cell line
278
in vitro differentiated cells
9
stem cell
Organ
370
epithelium
341
pancreas
25
vasculature
23
blood vessel
21
connective tissue
19
kidney
18
vein
10
brain
8
blood
8
bodily fluid
6
liver
5
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
361
AMP
324
HPAP
158
T1D
1
ITG
Genome assembly (visualization)
460
hg19
412
GRCh38
Lab
326
AMP-T2D consortium
324
Klaus Kaestner, Upenn
193
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed broadPeak
month_released!
December, 2019
May, 2020
BIOSAMPLE
ASSAY
844 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
pancreatic alpha cell
13
52
12
35
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
12
23
16
1
exocrine cell
39
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