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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
6
total RNA-seq
2
DNase-seq
2
RRBS
Assay category
7
DNA binding
6
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
1
control
Date released
11
October, 2019
6
July, 2019
Available data
24
bam
23
bigWig
17
bed narrowPeak
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
17
Homo sapiens
Biosample type
212
tissue
17
primary cell
1
cell line
Organ
340
epithelium
319
pancreas
21
connective tissue
17
kidney
16
vasculature
14
blood vessel
11
liver
10
brain
9
vein
8
blood
8
bodily fluid
5
heart
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
17
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
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audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
total RNA-seq
DNase-seq
RRBS
primary cell
epithelial cell of proximal tubule
7
1
kidney epithelial cell
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
renal cortical epithelial cell
1
1
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