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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
180
single cell RNA-seq
167
total RNA-seq
160
ATAC-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
Hi-C
8
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
349
Transcription
218
DNA accessibility
217
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
89
narrow histone mark
30
control
Date released
205
May, 2021
139
May, 2020
134
May, 2022
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
40
August, 2017
29
July, 2019
19
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
4
June, 2019
3
August, 2018
3
November, 2017
3
October, 2022
2
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
575
bigWig
564
bam
326
fastq
270
bed narrowPeak
247
tsv
153
zippedFastqFolder
100
tagAlign
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
866
Homo sapiens
Biosample type
2027
tissue
866
primary cell
251
in vitro differentiated cells
209
cell line
9
stem cell
Organ
303
epithelium
282
pancreas
21
connective tissue
17
kidney
16
vasculature
14
blood vessel
11
liver
10
brain
9
vein
8
blood
8
bodily fluid
5
heart
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
418
AMP
248
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
507
hg19
418
GRCh38
Lab
383
AMP-T2D consortium
248
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
February, 2023
BIOSAMPLE
ASSAY
866 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
12
25
29
31
1
pancreatic beta cell
13
12
11
16
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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