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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
43
ChIP-seq
27
DNase-seq
7
RRBS
6
Hi-C
3
total RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
139
DNA accessibility
43
DNA binding
8
DNA methylation
6
3D chromatin structure
3
Transcription
Target of assay
33
histone
33
histone modification
17
broad histone mark
16
narrow histone mark
8
control
2
RNA binding protein
2
transcription factor
Date released
98
May, 2020
30
June, 2019
30
October, 2019
19
May, 2021
11
July, 2019
4
August, 2021
2
February, 2021
2
May, 2019
2
November, 2020
1
August, 2017
1
March, 2020
Available data
388
bam
354
bigWig
fastq
156
bed narrowPeak
tsv
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
200
Homo sapiens
Biosample type
1008
tissue
200
primary cell
63
in vitro differentiated cells
37
cell line
Organ
60
epithelium
28
vasculature
26
blood vessel
22
kidney
22
vein
10
connective tissue
9
brain
8
liver
5
eye
4
musculature of body
3
heart
Project
200
AMP
Genome assembly (visualization)
117
hg19
65
GRCh38
Lab
200
AMP-T2D consortium
155
Klaus Kaestner, Upenn
142
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
tsv
BIOSAMPLE
ASSAY
200 results
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ATAC-seq
ChIP-seq
DNase-seq
RRBS
Hi-C
total RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
monocyte
15
1
1
1
macrophage
11
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