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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ATAC-seq
123
total RNA-seq
94
ChIP-seq
56
single cell RNA-seq
41
WGBS
29
snATAC-seq
22
DNase-seq
16
pCHi-C
7
Hi-C
6
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
208
DNA accessibility
181
Transcription
94
DNA binding
48
DNA methylation
7
3D chromatin structure
Target of assay
147
histone
147
histone modification
81
broad histone mark
narrow histone mark
11
control
2
RNA binding protein
2
transcription factor
Date released
153
May, 2021
139
May, 2020
134
May, 2022
23
October, 2019
22
July, 2019
22
June, 2019
18
September, 2020
8
January, 2021
6
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
3
February, 2021
3
October, 2022
2
August, 2021
2
May, 2019
1
August, 2017
1
March, 2020
1
March, 2023
Available data
456
bam
455
bigWig
fastq
250
tsv
167
bed narrowPeak
153
zippedFastqFolder
61
bigBed narrowPeak
53
tagAlign
30
bed broadPeak
30
bigBed broadPeak
24
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
554
Homo sapiens
Biosample type
1876
tissue
554
primary cell
138
cell line
120
in vitro differentiated cells
5
stem cell
Organ
147
epithelium
88
pancreas
25
kidney
24
vasculature
23
connective tissue
22
blood vessel
16
vein
brain
11
liver
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
239
AMP
159
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
292
hg19
217
GRCh38
Lab
214
AMP-T2D consortium
184
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
organ_slims!
brain
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
554 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
15
54
44
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
4
23
1
pancreatic beta cell
13
16
1
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