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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
150
total RNA-seq
117
ATAC-seq
59
single cell RNA-seq
35
snATAC-seq
16
pCHi-C
11
DNase-seq
3
Hi-C
3
RRBS
2
small RNA-seq
1
DNAme array
Assay category
211
Transcription
168
DNA binding
163
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
156
histone
156
histone modification
83
broad histone mark
73
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
45
February, 2023
42
February, 2021
30
August, 2017
21
September, 2020
17
July, 2019
14
June, 2019
12
September, 2018
10
April, 2018
10
July, 2018
8
January, 2021
6
November, 2020
3
November, 2017
1
June, 2018
1
March, 2023
1
November, 2018
Available data
350
bigWig
331
bam
170
bed narrowPeak
165
fastq
138
tsv
96
tagAlign
zippedFastqFolder
30
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
14
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
565
Homo sapiens
Biosample type
2671
tissue
567
cell line
565
primary cell
260
in vitro differentiated cells
9
stem cell
Organ
epithelium
261
pancreas
36
vasculature
31
blood vessel
28
kidney
26
connective tissue
22
vein
21
brain
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
266
AMP
199
T1D
99
HPAP
1
ITG
Genome assembly (visualization)
367
hg19
282
GRCh38
Lab
234
Kyle Gaulton, UCSD
231
AMP-T2D consortium
99
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
zippedFastqFolder
organ_slims!
epithelium
BIOSAMPLE
ASSAY
565 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
33
27
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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