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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
249
ChIP-seq
234
total RNA-seq
149
ATAC-seq
128
single cell RNA-seq
35
snATAC-seq
24
DNase-seq
16
pCHi-C
9
Hi-C
7
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
364
Transcription
249
DNA binding
209
DNA accessibility
14
DNA methylation
9
3D chromatin structure
Target of assay
217
histone
217
histone modification
113
broad histone mark
104
narrow histone mark
28
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
82
February, 2023
73
September, 2018
59
August, 2017
48
February, 2021
43
April, 2018
42
July, 2018
40
September, 2020
32
October, 2019
25
June, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
558
bigWig
546
bam
402
fastq
263
bed narrowPeak
244
tsv
zippedFastqFolder
96
tagAlign
82
bigBed narrowPeak
42
bed broadPeak
42
bigBed broadPeak
26
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
861
Homo sapiens
Biosample type
2012
tissue
861
primary cell
263
in vitro differentiated cells
103
cell line
9
stem cell
Organ
316
epithelium
261
pancreas
36
vasculature
31
blood vessel
28
kidney
26
connective tissue
22
vein
21
brain
liver
8
blood
8
bodily fluid
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
490
AMP
199
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
569
hg19
484
GRCh38
Lab
455
AMP-T2D consortium
234
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
files.file_type!
zippedFastqFolder
organ_slims!
heart
liver
BIOSAMPLE
ASSAY
861 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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