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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
DNase-seq
21
ChIP-seq
Assay category
25
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
21
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
575
bigWig
564
bam
402
fastq
270
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
46
Homo sapiens
Biosample type
212
tissue
59
cell line
46
primary cell
1
in vitro differentiated cells
Organ
21
epithelium
11
brain
11
vasculature
9
kidney
8
blood vessel
5
connective tissue
4
vein
2
heart
2
liver
1
eye
1
musculature of body
Project
46
AMP
Genome assembly (visualization)
42
GRCh38
39
hg19
Lab
46
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
46 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
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