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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
DNase-seq
Assay category
15
DNA binding
10
DNA accessibility
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
14
August, 2017
8
June, 2019
2
November, 2017
1
November, 2020
Available data
350
bigWig
331
bam
170
bed narrowPeak
165
fastq
138
tsv
96
tagAlign
73
zippedFastqFolder
30
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
14
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
25
Homo sapiens
Biosample type
175
tissue
59
cell line
25
primary cell
1
in vitro differentiated cells
Organ
epithelium
11
brain
11
vasculature
9
kidney
8
blood vessel
5
connective tissue
4
vein
2
heart
2
liver
1
eye
1
musculature of body
Project
25
AMP
Genome assembly (visualization)
24
hg19
23
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
cardiac fibroblast
2
astrocyte of the hippocampus
1
brain pericyte
1
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