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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
DNase-seq
19
ChIP-seq
Assay category
23
DNA accessibility
19
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
21
June, 2019
14
August, 2017
6
November, 2017
1
November, 2020
Available data
560
bigWig
544
bam
402
fastq
257
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
73
bigBed narrowPeak
42
bed broadPeak
42
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
42
Homo sapiens
Biosample type
175
tissue
59
cell line
42
primary cell
1
in vitro differentiated cells
Organ
21
epithelium
11
brain
11
vasculature
9
kidney
8
blood vessel
5
connective tissue
vein
2
heart
2
liver
1
eye
1
musculature of body
Project
42
AMP
Genome assembly (visualization)
40
GRCh38
35
hg19
Lab
42
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
vein
BIOSAMPLE
ASSAY
42 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
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