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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
65
single cell RNA-seq
53
ChIP-seq
32
ATAC-seq
6
WGBS
Assay category
146
Transcription
53
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
37
histone
37
histone modification
21
narrow histone mark
16
broad histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
61
September, 2018
37
February, 2023
32
July, 2018
29
April, 2018
29
August, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
237
fastq
233
bam
225
bigWig
115
tsv
100
bed narrowPeak
80
zippedFastqFolder
56
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
237
Homo sapiens
Biosample type
237
primary cell
60
cell line
15
in vitro differentiated cells
Organ
253
pancreas
237
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
0
bodily fluid
Project
168
AMP
69
HPAP
Genome assembly (visualization)
164
GRCh38
156
hg19
Lab
168
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
237 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
12
13
13
6
pancreatic beta cell
21
12
13
10
pancreatic ductal cell
4
9
13
4
pancreatic acinar cell
4
8
8
5
pancreatic delta cell
11
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