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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
Assay category
102
DNA binding
Target of assay
102
histone
102
histone modification
54
narrow histone mark
48
broad histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
May, 2021
38
August, 2017
32
September, 2018
21
October, 2019
3
August, 2021
3
June, 2019
3
November, 2017
2
May, 2019
Available data
102
bam
99
bigWig
85
bed narrowPeak
73
fastq
30
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
14
tagAlign
3
bed bed3+
Organism
102
Homo sapiens
Biosample type
626
tissue
102
primary cell
89
in vitro differentiated cells
26
cell line
2
stem cell
Organ
64
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
8
kidney
3
brain
3
liver
1
eye
1
musculature of body
Project
102
AMP
Genome assembly (visualization)
99
hg19
97
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
lab.title!
Maike Sander, UCSD
month_released!
May, 2021
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
skeletal muscle myoblast
12
pancreatic acinar cell
8
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