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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
94
total RNA-seq
15
pCHi-C
8
snATAC-seq
Assay category
117
DNA binding
94
Transcription
8
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
185
May, 2021
41
May, 2020
8
January, 2021
Available data
211
bigWig
176
bam
114
bed narrowPeak
92
tsv
84
tagAlign
2
bed bed3+
Organism
234
Homo sapiens
Biosample type
234
primary cell
71
tissue
47
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
199
T1D
35
AMP
Genome assembly (visualization)
211
hg19
176
GRCh38
Lab
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
0
Xin Sun, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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