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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
Assay category
104
DNA binding
Target of assay
217
histone
217
histone modification
113
broad histone mark
104
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
9
October, 2019
3
June, 2019
3
November, 2017
August, 2021
Available data
101
bigWig
93
bed narrowPeak
92
bam
45
tagAlign
40
fastq
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
Organism
104
Homo sapiens
Biosample type
322
tissue
104
primary cell
46
in vitro differentiated cells
11
cell line
1
stem cell
Organ
31
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
3
brain
3
kidney
1
eye
1
musculature of body
Project
64
AMP
40
T1D
Genome assembly (visualization)
101
hg19
91
GRCh38
Lab
54
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
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