Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
187
ATAC-seq
168
single cell RNA-seq
140
ChIP-seq
41
WGBS
29
snATAC-seq
28
DNase-seq
15
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
412
Transcription
245
DNA accessibility
140
DNA binding
50
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
139
May, 2020
139
May, 2021
134
May, 2022
82
February, 2023
59
September, 2020
56
September, 2018
February, 2021
43
April, 2018
43
August, 2017
42
July, 2018
30
June, 2019
29
July, 2019
20
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
October, 2022
2
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
469
bam
463
bigWig
324
fastq
246
tsv
165
bed narrowPeak
153
zippedFastqFolder
73
bigBed narrowPeak
49
tagAlign
38
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
872
Homo sapiens
Biosample type
1919
tissue
872
primary cell
485
cell line
215
in vitro differentiated cells
8
stem cell
Organ
359
epithelium
308
pancreas
27
vasculature
23
connective tissue
23
kidney
22
blood vessel
21
brain
13
vein
12
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
437
AMP
279
HPAP
155
T1D
1
ITG
Genome assembly (visualization)
473
hg19
410
GRCh38
Lab
422
AMP-T2D consortium
279
Klaus Kaestner, Upenn
170
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2021
target.investigated_as!
broad histone mark
other post-translational modification
BIOSAMPLE
ASSAY
872 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
10
25
1
monocyte
54
15
41
1
1
Langerhans cell
73
21
pancreatic beta cell
21
23
12
10
16
1
exocrine cell
39
+ See 83 more…
See all biosamples
Download