Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
180
single cell RNA-seq
175
ATAC-seq
133
ChIP-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
10
Hi-C
8
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
370
Transcription
260
DNA accessibility
133
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
102
histone
102
histone modification
54
narrow histone mark
48
broad histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
32
October, 2019
30
June, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
415
bam
404
bigWig
402
fastq
201
tsv
153
zippedFastqFolder
143
bed narrowPeak
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
829
Homo sapiens
Biosample type
2639
tissue
829
primary cell
547
cell line
215
in vitro differentiated cells
9
stem cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
25
connective tissue
22
vein
21
brain
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
455
AMP
324
HPAP
49
T1D
1
ITG
Genome assembly (visualization)
402
hg19
351
GRCh38
Lab
455
AMP-T2D consortium
324
Klaus Kaestner, Upenn
49
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
month_released!
January, 2019
May, 2021
BIOSAMPLE
ASSAY
829 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
12
35
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
12
23
13
16
1
exocrine cell
39
pancreatic acinar cell
4
11
9
8
1
+ See 75 more…
See all biosamples
Download