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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
34
ChIP-seq
28
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
273
DNA accessibility
56
DNA methylation
34
DNA binding
10
3D chromatin structure
Target of assay
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
139
May, 2020
134
May, 2022
87
May, 2021
82
February, 2023
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
41
September, 2018
29
July, 2019
27
June, 2019
21
August, 2017
11
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
June, 2018
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
378
bam
362
bigWig
329
fastq
253
tsv
153
zippedFastqFolder
71
bed narrowPeak
56
bigBed narrowPeak
31
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
814
Homo sapiens
Biosample type
2060
tissue
814
primary cell
522
cell line
169
in vitro differentiated cells
7
stem cell
Organ
332
epithelium
283
pancreas
26
connective tissue
20
kidney
19
vasculature
18
brain
15
blood vessel
10
liver
8
blood
8
bodily fluid
7
heart
7
vein
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
374
AMP
324
HPAP
115
T1D
1
ITG
Genome assembly (visualization)
373
hg19
319
GRCh38
Lab
369
AMP-T2D consortium
324
Klaus Kaestner, Upenn
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
audit.ERROR.category!
inconsistent ontology term
month_released!
January, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
814 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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